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Mingw32 compilation
From NWChem
Viewed 3314 times, With a total of 30 Posts
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Gets Around
Threads 26
Posts 85
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1:20:41 AM PDT - Fri, Sep 12th 2014 |
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Hi,
According to the release news, version 6.5 is compiled by Mingw32.
Unfortunately I did not find any information about it. The documentation refers to the compilation by Cygnus.
Could you be so kind to help with this?
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 4
Posts 936
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5:03:52 AM PDT - Fri, Sep 12th 2014 |
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This is what I have done to install NWChem under Mingw32
A prerequisite is to install Mpich, that can be found at the following URL
http://www.mpich.org/static/tarballs/1.4.1p1/mpich2-1.4.1p1-win-ia32.msi
Once Mpich is installed, you should copy the installation files to a different location to avoid the failure of the tools compilation. You can use the following command
cp -rp /c/Program\ Files\ \(x86\)/MPICH2/ ~/
Next, you need to set the env.
export NWCHEM_TOP=~/nwchem-6.5
export NWCHEM_TARGET=LINUX
export USE_MPI=y
export MPI_LOC=~/MPICH2
export MPI_INCLUDE=$MPI_LOC/include
export MPI_LIB=$MPI_LOC/lib
export LIBMPI="-lfmpich2g -lmpi"
export PYTHONHOME=/c/Python27/
export PYTHONVERSION=27
export DEPEND_CC=gcc
Then, you can start the compilation by typing
make FC=gfortran DEPEND_CC=gcc
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Gets Around
Threads 26
Posts 85
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9:58:39 AM PDT - Fri, Sep 12th 2014 |
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Thank you very much for your help and for addition into documentation.
Let me make a few clarifications.
1. Since the compilation done by UNIX commands, I guess that you used Msys. This is not a trivial point for Windows. I have never dealt with Msys, and it was not installed, even though I use Mingw32 itself. Please write about it, so that for Windows programmers it was clear.
2. In the description was not specified that before command
% make FC=gfortran DEPEND_CC=gcc
must be
% cd $NWCHEM_TOP/src
% make nwchem_config
3. It would be nice also give example of compilation without Python.
4. You specify
NWCHEM_TOP=~/nwchem-6.5
but the distribution is used a long name, and compilation with a long name fails. It would be good to explicitly specify the need for renaming.
I am afraid that the failure with a long name suggests that the full path enter into the program. I would not want that path of my PC were in the program. Can this be avoided?
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Gets Around
Threads 26
Posts 85
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10:11:35 AM PDT - Fri, Sep 12th 2014 |
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Unfortunately, the compilation fails:
Making all in paw_atom
gcc -c -I. -I/home/amnikitin/nwchem-6.5/src/include -I/home/amnikitin/nwchem-6.
5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DG
CC46 -DPARALLEL_DIAG -m32 -g -O2 -o paw_atom_driver.o paw_atom_driver.c
make[5]: *** No rule to make target `/home/amnikitin/nwchem-6.5/src/include/paw_
my_constants.h', needed by `/home/amnikitin/nwchem-6.5/lib/LINUX/libnwpwlib.a(pa
w_atom.o)'. Stop.
make[4]: *** [optimized] Error 2
make[3]: *** [subdirs] Error 1
make[2]: *** [subdirs] Error 1
make[1]: *** [subdirs] Error 1
make: *** [libraries] Error 1
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 4
Posts 936
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1:13:58 PM PDT - Fri, Sep 12th 2014 |
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Quote:P99 Sep 12th 8:58 amThank you very much for your help and for addition into documentation.
Let me make a few clarifications.
1. Since the compilation done by UNIX commands, I guess that you used Msys. This is not a trivial point for Windows. I have never dealt with Msys, and it was not installed, even though I use Mingw32 itself. Please write about it, so that for Windows programmers it was clear.
Yes
I have been using MSYS, too.
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Edited On 1:17:42 PM PDT - Fri, Sep 12th 2014 by Edoapra
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 4
Posts 936
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1:22:24 PM PDT - Fri, Sep 12th 2014 |
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Quote:P99 Sep 12th 8:58 am
2. In the description was not specified that before command
% make FC=gfortran DEPEND_CC=gcc
must be
% cd $NWCHEM_TOP/src
% make nwchem_config
Of course, all the usual NWChem compilation steps apply
Quote:P99 Sep 12th 8:58 am
3. It would be nice also give example of compilation without Python.
4. You specify
NWCHEM_TOP=~/nwchem-6.5
but the distribution is used a long name, and compilation with a long name fails. It would be good to explicitly specify the need for renaming.
I am afraid that the failure with a long name suggests that the full path enter into the program. I would not want that path of my PC were in the program. Can this be avoided?
I am not a MingW32/MSYS experts, therefore I cannot really help you on this.
My home directory on MSYS is /home/edo, therefore the full path of NWCHEM_TOP is
/home/edo/nwchem-6.5
If you have any suggestions to improve the MingW32 installation process, they are very welcome
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Edited On 1:41:03 PM PDT - Fri, Sep 12th 2014 by Edoapra
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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2:11:36 PM PDT - Fri, Sep 12th 2014 |
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Quote:P99 Sep 12th 9:11 amUnfortunately, the compilation fails:
[pre]Making all in paw_atom
gcc -c -I. -I/home/amnikitin/nwchem-6.5/src/include -I/home/amnikitin/nwchem-6.
5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DG
CC46 -DPARALLEL_DIAG -m32 -g -O2 -o paw_atom_driver.o paw_atom_driver.c
make[5]: *** No rule to make target `/home/amnikitin/nwchem-6.5/src/include/paw_my_constants.h', needed by `/home/amnikitin/nwchem-6.5/lib/LINUX/libnwpwlib.a(paw_atom.o)'. Stop.
make[4]: *** [optimized] Error 2
make[3]: *** [subdirs] Error 1
make[2]: *** [subdirs] Error 1
make[1]: *** [subdirs] Error 1
make: *** [libraries] Error 1[/pre]
Unfortunately, I am not able to reproduce this problem.
Could you please try the following:
cd /home/amnikitin/nwchem-6.5/src/nwpw/nwpwlib/pseudopotential/paw_atom
rm dependencies
make FC=gfortran DEPEND_CC=gcc
If this still fails with the same error, please send me the output of
grep paw_atom.o dependencies
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Gets Around
Threads 26
Posts 85
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12:17:39 AM PDT - Sat, Sep 13th 2014 |
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Yes, the same error
$ grep paw_atom.o dependencies
$(LIBRARY_PATH)(paw_atom.o): ./paw_vosko.h ./paw_utilities.h ./paw_sdir.h ./p
aw_potential.h ./paw_orbitals.h $(INCDIR)/paw_my_constants.h ./paw_matrix_elemen
ts.h ./paw_loggrid.h ./paw_kinetic_energy.h ./paw_ion.h ./paw_hartree.h ./paw_di
rac_exchange.h ./paw_core.h ./paw_comp_charge.h ./paw_basis.h ./paw_atom.h
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 4
Posts 936
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6:59:56 AM PDT - Sat, Sep 13th 2014 |
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What version of MinGW/gcc are you using?
Could you please try the following:
gcc -O0 -g -o $NWCHEM_TOP/bin/LINUX/depend.x $NWCHEM_TOP/src/config/makefile.h
cd /home/amnikitin/nwchem-6.5/src/nwpw/nwpwlib/pseudopotential/paw_atom
ls -l paw_my_constants.h
rm dependencies
make FC=gfortran DEPEND_CC=gcc
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Gets Around
Threads 26
Posts 85
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7:34:35 AM PDT - Mon, Sep 15th 2014 |
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4.8.1-4
Quote:Edoapra Sep 13th 6:59 am
Could you please try the following:
gcc -O0 -g -o $NWCHEM_TOP/bin/LINUX/depend.x $NWCHEM_TOP/src/config/makefile.h
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2830:8: error:
unknown type name 'flint'
.F.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2830:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.F.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2832:8: error:
unknown type name 'flint'
.f.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2832:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.f.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2834:8: error:
unknown type name 'flint'
.F.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2834:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.F.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2836:8: error:
unknown type name 'flint'
.f.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2836:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.f.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:1982:45: error
: declaration for parameter 'FC' but no such parameter
### extra mic compile stuff; make FC=ifort CC=icc
AR=xiar
Quote:Edoapra Sep 13th 6:59 am
cd /home/amnikitin/nwchem-6.5/src/nwpw/nwpwlib/pseudopotential/paw_atom
ls -l paw_my_constants.h
$ ls -l paw_my_constants.h
ls: paw_my_constants.h: No such file or directory
$ rm dependencies
rm: cannot lstat `dependencies': No such file or directory
$ make FC=gfortran DEPEND_CC=gcc
( cd /home/amnikitin/nwchem-6.5/src/config; make /home/amnikitin/nwchem-6.5/bin/
LINUX/depend.x ; )
gcc -g -o /home/amnikitin/nwchem-6.5/bin/LINUX/depend.x depend.c
/bin/rm -f depend.o
/home/amnikitin/nwchem-6.5/bin/LINUX/depend.x -I/home/amnikitin/nwchem-6.5/src/
tools/install/include > dependencies
gcc -c -I. -I/home/amnikitin/nwchem-6.5/src/include -I/home/amnikitin/nwchem-6.
5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DG
CC46 -DPARALLEL_DIAG -m32 -g -O2 -o paw_atom_driver.o paw_atom_driver.c
make[1]: *** No rule to make target `/home/amnikitin/nwchem-6.5/src/include/paw_
my_constants.h', needed by `/home/amnikitin/nwchem-6.5/lib/LINUX/libnwpwlib.a(pa
w_atom.o)'. Stop.
make: *** [optimized] Error 2
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 4
Posts 936
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10:54:45 AM PDT - Mon, Sep 15th 2014 |
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I am sorry, I sent you the wrong command
I meant
gcc -O0 -g -o $NWCHEM_TOP/bin/LINUX/depend.x $NWCHEM_TOP/src/config/depend.c
Quote:P99 Sep 15th 6:34 am
4.8.1-4
Quote:Edoapra Sep 13th 6:59 am
Could you please try the following:
gcc -O0 -g -o $NWCHEM_TOP/bin/LINUX/depend.x $NWCHEM_TOP/src/config/makefile.h
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2830:8: error:
unknown type name 'flint'
.F.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2830:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.F.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2832:8: error:
unknown type name 'flint'
.f.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2832:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.f.o:; flint $(CPPFLAGS) -L $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2834:8: error:
unknown type name 'flint'
.F.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2834:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.F.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2836:8: error:
unknown type name 'flint'
.f.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:2836:26: error
: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token
.f.o:; flint $(CPPFLAGS) -g -f -u $(SRCDIR)/nwchem.lbt $<
^
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/src/config/makefile.h:1982:45: error
: declaration for parameter 'FC' but no such parameter
### extra mic compile stuff; make FC=ifort CC=icc
AR=xiar
Quote:Edoapra Sep 13th 6:59 am
cd /home/amnikitin/nwchem-6.5/src/nwpw/nwpwlib/pseudopotential/paw_atom
ls -l paw_my_constants.h
$ ls -l paw_my_constants.h
ls: paw_my_constants.h: No such file or directory
$ rm dependencies
rm: cannot lstat `dependencies': No such file or directory
$ make FC=gfortran DEPEND_CC=gcc
( cd /home/amnikitin/nwchem-6.5/src/config; make /home/amnikitin/nwchem-6.5/bin/
LINUX/depend.x ; )
gcc -g -o /home/amnikitin/nwchem-6.5/bin/LINUX/depend.x depend.c
/bin/rm -f depend.o
/home/amnikitin/nwchem-6.5/bin/LINUX/depend.x -I/home/amnikitin/nwchem-6.5/src/
tools/install/include > dependencies
gcc -c -I. -I/home/amnikitin/nwchem-6.5/src/include -I/home/amnikitin/nwchem-6.
5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -DG
CC46 -DPARALLEL_DIAG -m32 -g -O2 -o paw_atom_driver.o paw_atom_driver.c
make[1]: *** No rule to make target `/home/amnikitin/nwchem-6.5/src/include/paw_
my_constants.h', needed by `/home/amnikitin/nwchem-6.5/lib/LINUX/libnwpwlib.a(pa
w_atom.o)'. Stop.
make: *** [optimized] Error 2
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 4
Posts 936
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11:01:00 AM PDT - Mon, Sep 15th 2014 |
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It seems that paw_my_constants.h got deleted. I have just verified that is present in the tarball available from download.
I suggest to reopen the tar.gz file.
$ rm Nwchem-6.5.revision26243-src.2014-09-10.tar.gz
$ wget "http://www.nwchem-sw.org/download.php?f=Nwchem-6.5.revision26243-src.2014-09-10.tar.gz" \
-O Nwchem-6.5.revision26243-src.2014-09-10.tar.gz >& /dev/null
$ tar tzf Nwchem-6.5.revision26243-src.2014-09-10.tar.gz|grep paw_my_constants.h
Nwchem-6.5.revision26243-src.2014-09-10/src/nwpw/nwpwlib/pseudopotential/paw_atom/paw_my_constants.h
Quote:P99 Sep 15th 6:34 amQuote:Edoapra Sep 13th 6:59 am
Quote:Edoapra Sep 13th 6:59 am
cd /home/amnikitin/nwchem-6.5/src/nwpw/nwpwlib/pseudopotential/paw_atom
ls -l paw_my_constants.h
$ ls -l paw_my_constants.h
ls: paw_my_constants.h: No such file or directory
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Gets Around
Threads 26
Posts 85
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12:10:21 AM PDT - Tue, Sep 16th 2014 |
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The file paw_my_constants.h was somehow corrupted.
I recompiled the newly opened archive.
export NWCHEM_TOP=~/nwchem-6.5
export NWCHEM_TARGET=LINUX
export USE_MPI=y
export MPI_LOC=~/MPICH2
export MPI_INCLUDE=$MPI_LOC/include
export MPI_LIB=$MPI_LOC/lib
export LIBMPI="-lfmpich2g -lmpi"
export NWCHEM_MODULES=all
export DEPEND_CC=gcc
cd $NWCHEM_TOP/src
make nwchem_config
make FC=gfortran DEPEND_CC=gcc
Now the error has become:
Making libraries in ccca
gfortran -c -m32 -march=pentium4 -mtune=pentium4 -O2 -g -fno-aggressive-loop-opt
imizations -I. -I../basis -I/home/amnikitin/nwchem-6.5/src/include -I/home/amni
kitin/nwchem-6.5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUN
DFLW -DGCC4 -DGCC46 -DPARALLEL_DIAG task_ccca.F
gfortran -c -m32 -march=pentium4 -mtune=pentium4 -O2 -g -fno-aggressive-loop-opt
imizations -I. -I../basis -I/home/amnikitin/nwchem-6.5/src/include -I/home/amni
kitin/nwchem-6.5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUN
DFLW -DGCC4 -DGCC46 -DPARALLEL_DIAG ccca_utils.F
Got lock on /home/amnikitin/nwchem-6.5/lib/LINUX/libccca.lock
ar r /home/amnikitin/nwchem-6.5/lib/LINUX/libccca.a task_ccca.o ccca_utils.o
d:\TDM-GCC-32\bin\ar.exe: creating D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/l
ib/LINUX/libccca.a
ranlib /home/amnikitin/nwchem-6.5/lib/LINUX/libccca.a
make nwchem.o stubs.o
gfortran -m32 -march=pentium4 -mtune=pentium4 -O2 -g -fno-aggressive-loop-optimi
zations -I. -I/home/amnikitin/nwchem-6.5/src/include -I/home/amnikitin/nwchem-
6.5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -
DGCC46 -DPARALLEL_DIAG -DCOMPILATION_DATE="'`date +%a_%b_%d_%H:%M:%S_%Y`'" -DCOM
PILATION_DIR="'/home/amnikitin/nwchem-6.5'" -DNWCHEM_BRANCH="'6.5'" -c -o nwche
m.o nwchem.F
gfortran -m32 -march=pentium4 -mtune=pentium4 -O2 -g -fno-aggressive-loop-optimi
zations -I. -I/home/amnikitin/nwchem-6.5/src/include -I/home/amnikitin/nwchem-
6.5/src/tools/install/include -DLINUX -DGFORTRAN -DGFORTRAN -DCHKUNDFLW -DGCC4 -
DGCC46 -DPARALLEL_DIAG -DCOMPILATION_DATE="'`date +%a_%b_%d_%H:%M:%S_%Y`'" -DCOM
PILATION_DIR="'/home/amnikitin/nwchem-6.5'" -DNWCHEM_BRANCH="'6.5'" -c -o stubs
.o stubs.F
gfortran -m32 -march=pentium4 -mtune=pentium4 -g -O0 -L/home/amnikitin/nwchem-6
.5/lib/LINUX -L/home/amnikitin/nwchem-6.5/src/tools/install/lib -o /home/amniki
tin/nwchem-6.5/bin/LINUX/nwchem nwchem.o stubs.o -lnwctask -lccsd -lmcscf -lselc
i -lmp2 -lmoints -lstepper -ldriver -loptim -lnwdft -lgradients -lcphf -lesp -ld
dscf -ldangchang -lguess -lhessian -lvib -lnwcutil -lrimp2 -lproperty -lsolvatio
n -lnwints -lprepar -lnwmd -lnwpw -lofpw -lpaw -lpspw -lband -lnwpwlib -lnwxc -l
cafe -lspace -lanalyze -lqhop -lpfft -ldplot -ldrdy -lvscf -lqmmm -lqmd -letrans
-lpspw -ltce -lbq -lcons -lperfm -ldntmc -lccca -lnwcutil -lga -larmci -lpeigs
-lperfm -lcons -lbq -lnwcutil -llapack -lblas -llapack -lblas -L/home/amniki
tin/MPICH2/lib -lfmpich2g -lmpi -lwsock32
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/lib/LINUX/libnwcutil.a(util_md_socke
ts.o): In function `create_server_socket':
D:\MinGW\msys\1.0\home\amnikitin\nwchem-6.5\src\util/util_md_sockets.c:29: undef
ined reference to `ga_error'
D:/MinGW/msys/1.0/home/amnikitin/nwchem-6.5/lib/LINUX/libnwcutil.a(util_md_socke
ts.o): In function `create_client_socket':
D:\MinGW\msys\1.0\home\amnikitin\nwchem-6.5\src\util/util_md_sockets.c:68: undef
ined reference to `ga_error'
collect2.exe: error: ld returned 1 exit status
make: *** [all] Error 1
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 4
Posts 936
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10:03:13 AM PDT - Tue, Sep 16th 2014 |
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Never seen this one before since I have to confess that have not compiled the MD part with mingw32 yet.
You can find a fix for this by applying the patch available at
http://www.nwchem-sw.org/images/Util_md_sockets.patch.gz
Instructions:
cd $NWCHEM_TOP/src
wget http://www.nwchem-sw.org/images/Util_md_sockets.patch.gz
gzip -d Util_md_sockets.patch.gz
patch -p0 < Util_md_sockets.patch
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Gets Around
Threads 26
Posts 85
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2:50:31 AM PDT - Wed, Sep 17th 2014 |
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Thank you very much. Compilation is successful.
Please tell me can I run NWChem in parallel mode, on a single processor, without installing MPI resident?
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AWC's:
2.5.10 MediaWiki - Stand Alone Forum Extension Forum theme style by: AWC
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