From NWChem
Viewed 1114 times, With a total of 8 Posts
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Forum Regular
Threads 54
Posts 246
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| 7:26:20 AM PST - Sat, Dec 2nd 2017 |
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Dear all
The version of GCC is 7.2.0 and the error is:
...
Making libraries in basis
make[1]: Entering directory '/home/hp/computation2/nwchem6.8/src/basis'
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -ge: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
gfortran -c -m64 -ffast-math -Wuninitialized -fdefault-integer-8 -g -g -O -I. -I/home/hp/computation2/nwchem6.8/src/include -I/home/hp/computation2/nwchem6.8/src/tools/install/include -DGFORTRAN -DCHKUNDFLW -DGCC4 -DEXT_INT -DLINUX -DLINUX64 -DPARALLEL_DIAG basis.F
make[1]: gfortran??????
../config/makefile.h:2683: recipe for target '/home/hp/computation2/nwchem6.8/lib/LINUX64/libnwcutil.a(basis.o)' failed
make[1]: *** [/home/hp/computation2/nwchem6.8/lib/LINUX64/libnwcutil.a(basis.o)] Error 127
make[1]: Leaving directory '/home/hp/computation2/nwchem6.8/src/basis'
GNUmakefile:103: recipe for target 'libraries' failed
make: *** [libraries] Error 1
NWCHEM6.6 encounters the same error on the identical environment
..
Making libraries in basis
make[1]: Entering directory '/home/hp/computation/nwchem6.6/src/basis'
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
gfortran -c -m64 -ffast-math -Wuninitialized -fdefault-integer-8 -g -g -O -I. -I/home/hp/computation/nwchem6.6/src/include -I/home/hp/computation/nwchem6.6/src/tools/install/include -DGFORTRAN -DCHKUNDFLW -DGCC4 -DEXT_INT -DLINUX -DLINUX64 -DPARALLEL_DIAG basis.F
make[1]: gfortran??????
../config/makefile.h:2532: recipe for target '/home/hp/computation/nwchem6.6/lib/LINUX64/libnwcutil.a(basis.o)' failed
make[1]: *** [/home/hp/computation/nwchem6.6/lib/LINUX64/libnwcutil.a(basis.o)] Error 127
make[1]: Leaving directory '/home/hp/computation/nwchem6.6/src/basis'
GNUmakefile:103: recipe for target 'libraries' failed
make: *** [libraries] Error 1
Perhaps I should use old versions of gcc.
Very Best Regards!
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Edited On 5:11:30 AM PST - Mon, Dec 4th 2017 by Xiongyan21
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Forum Regular
Threads 54
Posts 246
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| 6:10:40 AM PST - Mon, Dec 4th 2017 |
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Dear All
I removed GCC7.2.0 and installed GCC4.8.5 in order to compile GAMESS on the same
computer, but got the following error when NWCHEM6.6 was compiled
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configure: C compiler
configure:
checking for style of include used by make... GNU
checking whether the C compiler works... no
configure: error: in `/home/hp/computation/nwchem6.6/src/tools/build':
configure: error: C compiler cannot create executables
See `config.log' for more details
GNUmakefile:561: recipe for target 'build/config.status' failed
make[1]: *** [build/config.status] Error 1
make[1]: Leaving directory '/home/hp/computation/nwchem6.6/src/tools'
GNUmakefile:103: recipe for target 'libraries' failed
make: *** [libraries] Error 1
What is wrong with the C compiler?
Very Best Regards!
Sincerely Yours
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Edited On 6:48:47 AM PST - Mon, Dec 4th 2017 by Xiongyan21
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 9
Posts 1570
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| 12:51:46 PM PST - Mon, Dec 4th 2017 |
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What output you get by typing
gfortran -v
which gfortran
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Forum Regular
Threads 54
Posts 246
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| 6:55:13 PM PST - Mon, Dec 4th 2017 |
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Dear Edoapra
Command gfortran -v gives
gfortran is not installed
sudo apt install gfortran,
which gfortran gives blank, but gcc-4.8 -v gives
...
gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.5 (Ubuntu 4.8.5-4ubuntu6)
and which gcc-4.8 gives
/usr/bin/gcc-4.8
The Ubuntu version information is
...
Distributor ID: Ubuntu
Description: Ubuntu 17.10
Release: 17.10
Codename: artful
Thanks a lot for your help!
very Best Regards!
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Edited On 5:36:36 AM PST - Tue, Dec 5th 2017 by Xiongyan21
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Forum Regular
Threads 54
Posts 246
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| 8:24:49 PM PST - Mon, Dec 4th 2017 |
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Dear Edoapra
After the command export CC=/usr/bin/gcc-4.8 is added, the error becomes
...
( cd /home/hp/computation/nwchem6.6/src/config; make /home/hp/computation/nwchem6.6/bin/LINUX64/depend.x ; )
make[2]: Entering directory '/home/hp/computation/nwchem6.6/src/config'
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/usr/bin/gcc -g -o /home/hp/computation/nwchem6.6/bin/LINUX64/depend.x depend.c
make[2]: /usr/bin/gcc??????
GNUmakefile:45: recipe for target '/home/hp/computation/nwchem6.6/bin/LINUX64/depend.x' failed
make[2]: *** [/home/hp/computation/nwchem6.6/bin/LINUX64/depend.x] Error 127
make[2]: Leaving directory '/home/hp/computation/nwchem6.6/src/config'
gfortran -c -m64 -ffast-math -Wuninitialized -fdefault-integer-8 -g -g -O -I. -I/home/hp/computation/nwchem6.6/src/include -I/home/hp/computation/nwchem6.6/src/tools/install/include -DGFORTRAN -DCHKUNDFLW -DGCC4 -DEXT_INT -DLINUX -DLINUX64 -DPARALLEL_DIAG basis.F
make[1]: gfortran??????
../config/makefile.h:2532: recipe for target '/home/hp/computation/nwchem6.6/lib/LINUX64/libnwcutil.a(basis.o)' failed
make[1]: *** [/home/hp/computation/nwchem6.6/lib/LINUX64/libnwcutil.a(basis.o)] Error 127
make[1]: Leaving directory '/home/hp/computation/nwchem6.6/src/basis'
GNUmakefile:103: recipe for target 'libraries' failed
make: *** [libraries] Error 1
The HP Z2 Mini G3 workstation seems to run Ubuntu 17.10 very fluently with an Intel core i7 6700 cpu, and a Z2 Turbo Drive G2 MLC PCIe SSD as well as a Samsung 16GB DDR4 2400MHz non-ECC memory, the latter two of which can be upgraded. It also has an additional 1TB HDD.
Thanks!
Very Best Regards!
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Edited On 3:02:31 AM PDT - Sat, Oct 20th 2018 by Xiongyan21
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Edoapra Forum:Admin, Forum:Mod, bureaucrat, sysop
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Forum Vet
Threads 9
Posts 1570
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| 9:55:25 AM PST - Tue, Dec 5th 2017 |
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Please send the output of
gfortran-4.8 -v
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Forum Regular
Threads 54
Posts 246
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| 8:20:05 PM PST - Tue, Dec 5th 2017 |
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Dear Dr. Edoapra
The command gfortran-4.8 -v leaves blank.
Since it seems GCC-4.9 is no longer available from the official GCC website, I
reinstalled GCC-4.8 and GFORTRAN-4.8, and gcc-4.8 -v gives
Using built-in specs.
COLLECT_GCC=gcc-4.8
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.5-4ubuntu6' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.5 (Ubuntu 4.8.5-4ubuntu6)
and gfortran-4.8 -v gives
Using built-in specs.
COLLECT_GCC=gfortran-4.8
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.5-4ubuntu6' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.5 (Ubuntu 4.8.5-4ubuntu6) .
The compilation also fails even CC and FC are exported
...
Making libraries in basis
make[1]: Entering directory '/home/hp/computation/nwchem6.6/src/basis'
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
( cd /home/hp/computation/nwchem6.6/src/config; make /home/hp/computation/nwchem6.6/bin/LINUX64/depend.x ; )
make[2]: Entering directory '/home/hp/computation/nwchem6.6/src/config'
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/bin/sh: 1: [: -gt: unexpected operator
/usr/bin/gcc -g -o /home/hp/computation/nwchem6.6/bin/LINUX64/depend.x depend.c
make[2]: /usr/bin/gcc??????
GNUmakefile:45: recipe for target '/home/hp/computation/nwchem6.6/bin/LINUX64/depend.x' failed
make[2]: *** [/home/hp/computation/nwchem6.6/bin/LINUX64/depend.x] Error 127
make[2]: Leaving directory '/home/hp/computation/nwchem6.6/src/config'
gfortran -c -m64 -ffast-math -Wuninitialized -fdefault-integer-8 -g -g -O -I. -I/home/hp/computation/nwchem6.6/src/include -I/home/hp/computation/nwchem6.6/src/tools/install/include -DGFORTRAN -DCHKUNDFLW -DGCC4 -DEXT_INT -DLINUX -DLINUX64 -DPARALLEL_DIAG basis.F
make[1]: gfortran??????
../config/makefile.h:2532: recipe for target '/home/hp/computation/nwchem6.6/lib/LINUX64/libnwcutil.a(basis.o)' failed
make[1]: *** [/home/hp/computation/nwchem6.6/lib/LINUX64/libnwcutil.a(basis.o)] Error 127
make[1]: Leaving directory '/home/hp/computation/nwchem6.6/src/basis'
GNUmakefile:103: recipe for target 'libraries' failed
make: *** [libraries] Error 1
Thanks!
Very Best Regards!
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Edited On 8:25:05 PM PST - Tue, Dec 5th 2017 by Xiongyan21
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Forum Regular
Threads 54
Posts 246
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| 3:17:23 AM PST - Wed, Dec 6th 2017 |
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Dear Dr. Edoapra
I unpack the official GAMESS 2017 R2 released this September, and
am very glad to know from the version information that there is an added
support for GNU compilers up to version 7.2 (Linux. OSX). So I will try
GCC 7.2.
Thanks!
Very Best Regards!
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Edited On 6:51:43 PM PST - Fri, Dec 8th 2017 by Xiongyan21
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Forum Regular
Threads 54
Posts 246
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| 5:15:19 AM PST - Wed, Dec 6th 2017 |
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Now the compilation of NWCHEM6.6 on Ubuntu 17.10 has been successful with GCC 7.2.0 and additional downloading and installation of GFORTRAN 7.2.0, ans so has the second candidate release of of NWCHEM6.8 been on the same environment.
...
/bin/rm -f nwchem.o stubs.o
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Edited On 2:45:14 AM PST - Thu, Dec 7th 2017 by Xiongyan21
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